#!/bin/bash
# Optimized inference script for 4000x4000 Hi-C matrices

cd /home/hlx/lsq/Squidiff

python -m Squidiff.hic_inference \
    --checkpoint_path ./checkpoints \
    --output_dir ./results \
    --timepoints 0.0,0.25,0.5,0.75,1.0 \
    --num_samples 5 \
    --use_semantic_guidance \
    --early_matrix_path /path/to/early_4000x4000.npy \
    --late_matrix_path /path/to/late_4000x4000.npy \
    --use_slerp \
    --ddim_steps 50 \
    --batch_chunk 8 \
    --use_fp16 \
    --clip_mode nonneg \
    --evaluate_zsem \
    --true_samples_dir /path/to/true_samples
